top of page

3.1.1 Atomic structure

3.1.1.1  Fundamental particles

The atom is made up of a very dense, small and positively charged nucleus surrounded by negatively charged electrons.  The electrons occur at specific energy levels, the principal energy levels are know as shells.  The nucleus has neutrons and protons having a relative mass of 1 whereas the mass of an electron is so small that it is often considered to be zero.  

 

The table below gives the information on mass charge and location.

Particle      Location       Relative charge      Relative mass

Proton        Nucleus         +1                            1

Neutron      Nucleus         0                              1

Electron     Shells            -1                              0 or 1/1836

3.1.1.2  Mass number and isotopes

 

Atomic mass (mass number)

 

The mass number or atomic mass is the number of protons + the number of neutrons in the nucleus of an atom.

 

Atomic number (proton number)

 

The atomic number is unique to every element and is the number of protons in the nucleus of an atom.  In an atom the number of protons will also be equal to the number of electrons as an atom has neutral charge.

 

Isotopes

 

Isotopes are atoms of the same element having the same atomic number but different mass numbers due to the difference in the number of neutrons.  Isotopes will therefore have the same chemical properties but physical properties such as rate of diffusion or boiling points may vary.

 

Isotopes can be expressed as 

original?tenant=vbu-digital

Where A is the mass number or atomic mass and z is the atomic number.  Examples of isotopes are as follows:

original?tenant=vbu-digital

These are the isotopes of hydrogen which are known as hydrogen, deuterium and tritium having 0, 1 and 2 neutrons respectively.

Time of Flight Mass Spectrometer

This instrument is a method of analysis.  It is used:

  • to find the masses and abundance of isotopes of an element in order to determine the relative atomic mass

  • determine the relative moleculer mass of a molecule

There are 4 important stages to this process:

  • ​ionisation

  • acceleration

  • flight tube

  • detection

Ionisation can be achieved in 2 ways:

Electrospray ionisation

This technique is useful for large organic molecules as there is very little chance of fragmentation.  The sample is first dissolved in a polar volatile liquid that provides protons and allows ionisation.  The mixture is passed through a hyperdermic where a high voltage is applied to the needle causing the particles to gain a proton.  The mass to charge ratio for a molecule that has become protonated is:

m/z = Mr + 1    the process can be represented as      \(X(g) + H^ +\)            \(XH^+(g)\) 

Electron impact (Electron ionisation)

The sample is first vapourised then passed into the mass spectrometer where electrons are fired at the particles using an electron gun (filament that current is passed through releasing electrons accelerated by a p.d.).  This normally knocks one electron from each particle to form a 1+ ion as shown below:

\(X(g)\)            \(X^+(g) + e^-\)

This technique is used for low formula mass molecules.

Acceleration

The positive ions produced are then accelerated using an electric field so that they all have the same kinetic energy.

\(KE = \frac{1}{2}mv^2\)  so  \(v = \sqrt{\frac{2KE}{m}}\)

Flight tube

The positive ions pass into the flight tube through a small hole in the negatively charged plate.  As they are given the same energy the time taken for particles to travel through the tube will be dependent on their mass. The lower the mass the greater will be their velocity so the lower the time taken to pass across the flight tube.

Detection

When the positive ions reach the end of the flight tube they will hit a detector and be discharged by gaining electrons from the plate which causes a small current to flow.  The size of current is a measure of the number of ions hitting the plate per unit time so is proportional to the abundance of the ion.

                                                                           Time of flight mass spectrometer summary

                                      sample: chlorine \(Cl_2\)                                                                            mass spectrum

  1. Ionisation using electron impact method where an electron gun made up of a filament releases electrons when a current is passed through it.  The electrons are accelerated by a postive plate and collide with the sample particles causing ionisation.

  2. Acceleration using a negatively charged plate makes the positive ions enter the flight tube,

  3. Lighter particles will move faster and reach the end of the flight tube quicker.  In this case chlorine 35 ions being lighter than chlorine 37 reach the detector first.  

  4. The greater number of chlorine 35 ions being discharged at the detector per unit time produces a greater current and so a higher % abundance on the graph and the lower time of flight produces a smaller m/z given as 35 on the graph.

Calculating relative atomic mass given the weighted means of isotopes

 

The following formula can be used to calculate relative atomic mass given the abundance and relative isotopic masses of each isotope:

                       \(relative \ atomic \ mass \ Ar =\) \(\frac{combined \ mass \ of \ all \ isotopes}{combined \ abundance \ of \ isotopes}\)

Exercise 1

  1. State the meaning of the word isotope.

  2. There are two methods of ionisation used in the mass spectrometer, briefly describe these two methods and the type of molecule suitable for:                                                                                                                                                                                          a) electron impact                                                                                                                                                                              b) electrospray ionisation

  3. When particles are accelerated in the mass spectrometer why do different isotopes have different speeds in the flight tube?

  4. Exlain how a small current is produced when particles reach the detector in a mass spectrometer.

  5. For the mass spectrum of chlorine shown above, what produces the peaks at                                                                                         a) m/z 72                                                                                                                                                                                           b) m/z 74

  6. Write down the formula for calculating relative atomic mass.

  7. Calculate the relative atomic mass of the Boron isotopes B-10 and B-11 if their abundances are 19.8% and 80.2% respectively.

  8. Calculate the relative atomic mass of Silicon having isotopes Si-28, Si-29 and Si-30 with relative abundances of 92.21%, 4.70% amd 3.09% respectively.

Time of Flight Mass Spectrometer_edited.jpg

3.1.1.3  Electron configuration


Students should be able to state the electron configurations of atoms and ions up to Z = 36 in  terms of shells and sub-shells (orbitals) s, p and d.


Electron arrangement 


Electrons in atoms are found in main or principal energy levels which have numbers. At this level of study there are 4 principal energy levels and each energy level has sub-levels that are designated using letters s, p, d and f.  This is summarised in the table below:



image_edited.jpg
AS Level Chemistry S orbital_edited.jpg
AS Level Chemistry P orbitals_edited.jpg

s orbital is a spherical shape

p orbitals have a dumbell  shape

Principal energy level 1 is closest to the nucleus so electrons here have the lowest energy.

Within an energy level different sub-levels have slightly different energies due to the difference in shielding.

 

Notice that sub-levels increase by one moving up in the principal energy levels and the number of orbitals in each sub-level is an odd number starting with 1 for the s sub-level.

 

As each orbital can hold a maximum of 2 electrons (with opposite spin) the maximum number of electrons that can occupy a sub-shell is 2 times the number of orbitals in that sub-shell.

 

Increasing principal energy levels and distance from the nucleus

 

As the principal energy levels get further away from the nucleus they get closer and closer to each other. At the transition between principal energy level 3 and 4 they are close enough for overlap, in terms of energy, of the 4s and 3d sub-shells.

 

So a complication to the hierarchy of energy levels is that in atoms the 3d sub energy level is slightly higher in energy than the 4s so it is written first.

 

Example of electron configuration using s, p, d, f notation.

 

F Flourine  Z = 9   

 

original?tenant=vbu-digital

Exercise 1


1. Write down the electronic structure of the following elements using s, p, d, f notation.


   a) Hydrogen

   b) Carbon

   c) Oxygen

   d) Sodium

   e) Argon

   f) Germanium 

Electrons in an orbital


Electrons can be shown as arrows inside boxes representing electrons (Afbau diagram).  Only a maximum of two electrons can occupy an orbital and the arrows point in opposite directions showing opposite spin of a pair of electrons.  Examples shown below:


Aluminium Al   z = 13


original?tenant=vbu-digital

Silicon Si         z = 14

original?tenant=vbu-digital

Exercise 2

 

1. State the electronic structure of the following elements, including the electrons shown in box notation as arrows (Aufbau diagram):

    a) Li

    b) Mg

    c) Cl

    d) Co

 

2. For each of a) - d) state which block in the periodic table each element is in.

 

 

bottom of page